Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs28384101 | chr4:101201437 | G/T | 1.62E-10 | 208 | 15.07 | 16.43 | 9 | KM Plot |
| KIRP | rs28384495 | chr10:74856576 | C/G | 5.93E-12 | 212 | 16.73 | 12.4 | 5.6 | KM Plot |
| KIRP | rs28403207 | chr5:176706799 | G/T | 4.29E-7 | 212 | 4.88 | 19.27 | 15.2 | KM Plot |
| KIRP | rs28461408 | chr5:176662293 | G/A | 6.29E-7 | 208 | 4.93 | 20.72 | 15.88 | KM Plot |
| KIRP | rs28532452 | chr15:24739757 | G/C | 1.15E-6 | 211 | 16.43 | 14.83 | 9.77 | KM Plot |
| KIRP | rs28541847 | chr18:76073520 | C/T | 9.4E-5 | 214 | 16.43 | 14.87 | 10.55 | KM Plot |
| KIRP | rs28548633 | chr10:74872008 | G/A | 5.34E-12 | 213 | 16.73 | 11.77 | 5.6 | KM Plot |
| KIRP | rs28551159 | chr6:26376368 | A/G | 3.08E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs28551645 | chr3:195822889 | C/T | 5.23E-5 | 207 | 14.87 | 16.43 | 11.03 | KM Plot |
| KIRP | rs28563911 | chr5:176714943 | T/C | 4.29E-7 | 212 | 4.88 | 19.27 | 15.2 | KM Plot |
| KIRP | rs28572394 | chr10:63440156 | T/A | 0 | 214 | 18 | 9 | 3.38 | KM Plot |
| KIRP | rs28576405 | chr15:24548057 | G/T | 3.24E-5 | 211 | 17.52 | 14.03 | 10.23 | KM Plot |
| KIRP | rs28577907 | chr3:100011997 | T/A | 4.46E-5 | 210 | 16.43 | 18.47 | 4.67 | KM Plot |
| KIRP | rs28580074 | chr5:176721198 | T/C | 4.29E-7 | 212 | 4.88 | 19.27 | 15.2 | KM Plot |
| KIRP | rs28597108 | chr16:47626747 | T/C | 7.92E-8 | 213 | 17.2 | 12.9 | 12.85 | KM Plot |